nf-core/tools API documentation

Automated documentation for nf-core/tools (1.13.3)

readme

`PipelineLint.readme()`

Repository README.md tests

The README.md files for a project are very important and must meet some requirements:

Nextflow badge
- If no Nextflow badge is found, a warning is given
- If a badge is found but the version doesn’t match the minimum version in the config file, the test fails
- Example badge code:
```
[![Nextflow](https://img.shields.io/badge/nextflow-%E2%89%A50.27.6-brightgreen.svg)](https://www.nextflow.io/)
```
Bioconda badge
- If your pipeline contains a file called environment.yml in the root directory, a bioconda badge is required
- Required badge code:
```
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg)](https://bioconda.github.io/)
```

Note

These badges are a markdown image ![alt-text](<image URL>) inside a markdown link [markdown image](<link URL>), so a bit fiddly to write.