Fixes and standardizes GFF/GTF files and outputs a cleaned GFF/GTF file
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
gxf:file
Annotation file in GFF3/GTF format
*.{gff, gtf}
output_gff
meta:file
Cleaned annotation file in GFF3 format
*.{gff}
*.agat.gff:file
log
Log file of the conversion process
*.{log}
*.log:file
versions
versions.yml:file
File containing software versions
versions.yml
AGAT is a toolkit for manipulation and getting information from GFF/GTF files
